About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85614914_85615799_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85614914 - 85615799
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGCTATC
5'SS Class:
major
3'SS Sequence:
ATTTTCTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAACGTTAATT
Flanking Amino Acid:
AALEEGHAWRKRSTRMNILG
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.3
67.1
44.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.9
0.74
0.7
77.9
30.3
Minor 5ss
44
-0.7
3
54
43.6
Minor BPS
62.2
0.46
2.1
81.65
40

Associated Gene:

Gene:
GRB10
Ensembl Gene ID:
ENSAPLG00000004267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023835
85608666 - 85716492
107827
ENSAPLT00000019390
85610092 - 85671114
61023
ENSAPLT00000004425
85610007 - 85717127
107121
ENSAPLT00000037907
85608666 - 85694050
85385