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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85615917_85616582_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85615917 - 85616582
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
AATTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTTTTGAAAC
Flanking Amino Acid:
AMLPHFATPVRSVSENSLVA
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.6
0.71
0.8
78
35.4
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
58.7
0.25
1.5
68.97
36

Associated Gene:

Gene:
GRB10
Ensembl Gene ID:
ENSAPLG00000004267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037907
85608666 - 85694050
85385
ENSAPLT00000023835
85608666 - 85716492
107827
ENSAPLT00000019390
85610092 - 85671114
61023
ENSAPLT00000004425
85610007 - 85717127
107121