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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85616661_85619894_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85616661 - 85619894
Intron Length:
3234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAGAT
5'SS Class:
major
3'SS Sequence:
TTTCTGTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
CTTTGAATAACA
Flanking Amino Acid:
CWMTAFRLLKYGMLLYQNYR
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
67.7
37.6
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
79.3
0.66
1
76.5
37.5
Minor 5ss
43.7
-0.7
3.3
64.3
47.2
Minor BPS
48.5
-0.1
2.3
69.46
42.6

Associated Gene:

Gene:
GRB10
Ensembl Gene ID:
ENSAPLG00000004267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023835
85608666 - 85716492
107827
ENSAPLT00000019390
85610092 - 85671114
61023
ENSAPLT00000004425
85610007 - 85717127
107121
ENSAPLT00000037907
85608666 - 85694050
85385