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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85763842_85767300_R

Intron Information:

Intron Rank:
155010
Intron Class:
major
Intron Phase:
Intron Coordinates:
85763842 - 85767300
Intron Length:
3459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CTTTCTTTACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
78.8
35.1
Major BPS
74
0.6
1
65.6
41.1
Major PPT
77.3
0.61
0.9
71.5
38.2
Minor 5ss
35.2
-1.7
3.8
55.5
48.6
Minor BPS
60.4
0.31
1.7
70.99
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030881
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032885
85763417 - 85768292
4876