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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85813685_85814290_R

Intron Information:

Intron Rank:
130943
Intron Class:
major
Intron Phase:
Intron Coordinates:
85813685 - 85814290
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.3
0.75
0.8
76.9
37.3
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
47.7
-0.3
2
59.57
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017677
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042013
85805648 - 85814763
9116