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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8582593_8583759_R

Intron Information:

Intron Rank:
141602
Intron Class:
major
Intron Phase:
Intron Coordinates:
8582593 - 8583759
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.4
29.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.4
0.71
0.8
75.2
34.1
Minor 5ss
42.3
-0.8
2.9
59
45.5
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017346
8582072 - 8584116
2045