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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8582593_8588183_R

Intron Information:

Intron Rank:
141606
Intron Class:
major
Intron Phase:
Intron Coordinates:
8582593 - 8588183
Intron Length:
5591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGAA
5'SS Class:
major
3'SS Sequence:
TTTTACACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
72.7
31.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.4
0.71
0.8
75.2
34.1
Minor 5ss
31.5
-2.1
3.2
36.7
42.9
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044491
8582525 - 8588206
5682