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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85836893_85837545_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85836893 - 85837545
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TTTCACATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTCTTTTCACA
Flanking Amino Acid:
TGGGKEKLRKVSDSALYGNH
Intron Amino Acid Position:
1229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.8
0.58
0.9
67.3
38.7
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
57.1
0.22
1.7
70.42
35.8

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020276
85829298 - 85979551
150254
ENSAPLT00000004807
85829298 - 85979551
150254
ENSAPLT00000042977
85829298 - 85943421
114124
ENSAPLT00000038044
85829298 - 85943421
114124
ENSAPLT00000033289
85829298 - 85943421
114124