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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8583876_8588183_R

Intron Information:

Intron Rank:
141605
Intron Class:
major
Intron Phase:
Intron Coordinates:
8583876 - 8588183
Intron Length:
4308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGAA
5'SS Class:
major
3'SS Sequence:
CACACATATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AAATATTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
72.7
31.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
62.2
0.28
1
54
39.3
Minor 5ss
31.5
-2.1
3.2
36.7
42.9
Minor BPS
49.9
0.08
1.7
66.03
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031811
8582072 - 8588186
6115