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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85839564_85840827_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85839564 - 85840827
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GTGTATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTATATGTAATA
Flanking Amino Acid:
TLADLDEDLEAMDVKSNSDS
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
73
38.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.4
0.66
0.9
73.2
41.7
Minor 5ss
31.2
-2.2
3.4
41.6
45.4
Minor BPS
47.3
-0.2
2.1
60.45
40.2

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038044
85829298 - 85943421
114124
ENSAPLT00000033289
85829298 - 85943421
114124
ENSAPLT00000020276
85829298 - 85979551
150254
ENSAPLT00000004807
85829298 - 85979551
150254
ENSAPLT00000042977
85829298 - 85943421
114124