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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85853441_85876155_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
85853441 - 85876155
Intron Length:
22715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
GTATTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCAGCTAACT
Flanking Amino Acid:
VTAPTKLVPKQSLLPAHDNA
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
74.9
36.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.7
0.51
0.9
71.1
39.8
Minor 5ss
57.9
0.27
2.2
68.9
35.1
Minor BPS
48.2
-0
2.5
79.61
41.7

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033289
85829298 - 85943421
114124
ENSAPLT00000020276
85829298 - 85979551
150254
ENSAPLT00000042977
85829298 - 85943421
114124
ENSAPLT00000038044
85829298 - 85943421
114124