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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85872285_85876155_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
85872285 - 85876155
Intron Length:
3871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTCCCCCAACA
Flanking Amino Acid:
VTAPTKLVPKLYCCASFPSY
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
74.9
36.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.5
0.57
0.8
70.6
28.9
Minor 5ss
57.9
0.27
2.2
68.9
35.1
Minor BPS
60.7
0.33
1.9
78.63
37.1

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042812
85872241 - 85979534
107294