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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85879329_85900956_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85879329 - 85900956
Intron Length:
21628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAATT
Flanking Amino Acid:
MSGQEKMAVQISQGASLNDL
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.4
0.5
0.9
65.4
40.7
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
66.4
0.59
1.4
80.75
35.2

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020276
85829298 - 85979551
150254
ENSAPLT00000042977
85829298 - 85943421
114124
ENSAPLT00000020194
85872241 - 85979534
107294
ENSAPLT00000042812
85872241 - 85979534
107294
ENSAPLT00000004807
85829298 - 85979551
150254
ENSAPLT00000038044
85829298 - 85943421
114124
ENSAPLT00000033289
85829298 - 85943421
114124