Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85929394_85933436_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85929394 - 85933436

Intron Length:

4043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

GTAATTGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TCTATTGTAATT

Flanking Amino Acid:

SELYAWDRKREPSRSVSLSS

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.2

38.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

73.3

0.53

69.5

45.7

Minor 5ss

38.8

-1.3

50.2

46.4

Minor BPS

50.1

0.08

71.2

40.9

Associated Gene:

Gene:

COBL

Ensembl Gene ID:

ENSAPLG00000004666

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038044

85829298 - 85943421

114124

ENSAPLT00000024206

85900717 - 85946228

45512