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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85931462_85933436_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85931462 - 85933436
Intron Length:
1975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTCCTTTCATT
Flanking Amino Acid:
SELYAWDRKRVPPSKTQSEP
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.7
0.69
0.8
72.4
37.7
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
60.3
0.4
1.7
77.88
38.9

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020194
85872241 - 85979534
107294
ENSAPLT00000042977
85829298 - 85943421
114124
ENSAPLT00000004807
85829298 - 85979551
150254
ENSAPLT00000042812
85872241 - 85979534
107294
ENSAPLT00000033289
85829298 - 85943421
114124
ENSAPLT00000047824
85900717 - 85964688
63972
ENSAPLT00000020276
85829298 - 85979551
150254
ENSAPLT00000047580
85900274 - 85979534
79261