Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85933666 - 85934459

Intron Length:

794

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTACT

5'SS Class:

strong_major

3'SS Sequence:

CTTGTTTCTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCATCAC

U12 Branch Point Sequence:

TTGTTTCTACAG

Flanking Amino Acid:

IKRPLPRAPEKSVRLVVNYL

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

1.2

84.4

33.5

Major BPS

53.4

0.09

1.1

57.3

37.7

Major PPT

85.6

0.8

32.2

Minor 5ss

33.8

-1.8

2.6

44.2

Minor BPS

-0.5

52.26

42.8

Associated Gene:

Gene:

COBL

Ensembl Gene ID:

ENSAPLG00000004666

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020276

85829298 - 85979551

150254

ENSAPLT00000042812

85872241 - 85979534

107294

ENSAPLT00000020194

85872241 - 85979534

107294

ENSAPLT00000038044

85829298 - 85943421

114124

ENSAPLT00000047824

85900717 - 85964688

63972

ENSAPLT00000004807

85829298 - 85979551

150254

ENSAPLT00000033289

85829298 - 85943421

114124

ENSAPLT00000047580

85900274 - 85979534

79261

ENSAPLT00000024206

85900717 - 85946228

45512

ENSAPLT00000042977

85829298 - 85943421

114124

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85933666_85934459_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: