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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85934671_85942469_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85934671 - 85942469
Intron Length:
7799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTTTTCTCCATG
Flanking Amino Acid:
GVEQKTTVQGSKAVMDLLVD
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
86.3
0.82
0.7
80.7
24.7
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
52.1
-0
2
66.82
41.6

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020194
85872241 - 85979534
107294
ENSAPLT00000038044
85829298 - 85943421
114124
ENSAPLT00000047824
85900717 - 85964688
63972
ENSAPLT00000004807
85829298 - 85979551
150254
ENSAPLT00000033289
85829298 - 85943421
114124
ENSAPLT00000047580
85900274 - 85979534
79261
ENSAPLT00000024206
85900717 - 85946228
45512
ENSAPLT00000042977
85829298 - 85943421
114124
ENSAPLT00000020276
85829298 - 85979551
150254
ENSAPLT00000042812
85872241 - 85979534
107294