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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85942677_85946045_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
85942677 - 85946045
Intron Length:
3369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.3
0.59
1
80.4
31.7
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
65.9
0.58
1.6
80.47
41.8

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024206
85900717 - 85946228
45512