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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85942677_85979490_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85942677 - 85979490
Intron Length:
36814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TATTTCTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCTTATTT
Flanking Amino Acid:
VRPAAGKPPSGRRMKARAPP
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.9
42.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.3
0.59
1
80.4
31.7
Minor 5ss
30.6
-2.2
3.3
33.6
41.9
Minor BPS
65.9
0.58
1.6
80.47
41.8

Associated Gene:

Gene:
COBL
Ensembl Gene ID:
ENSAPLG00000004666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020276
85829298 - 85979551
150254
ENSAPLT00000020194
85872241 - 85979534
107294
ENSAPLT00000004807
85829298 - 85979551
150254
ENSAPLT00000047580
85900274 - 85979534
79261
ENSAPLT00000042812
85872241 - 85979534
107294