Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_85986027_85986568_F

Intron Information:

Intron Rank:

136476

Intron Class:

major

Intron Phase:

Intron Coordinates:

85986027 - 85986568

Intron Length:

542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGTTT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTCTCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AACTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

81.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

76.8

0.6

0.8

69.7

36.7

Minor 5ss

42.7

-0.8

3.4

64.6

46.7

Minor BPS

54.1

0.21

1.5

66.33

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040256

85985969 - 85986794

826