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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86076386_86077207_F

Intron Information:

Intron Rank:
127795
Intron Class:
major
Intron Phase:
Intron Coordinates:
86076386 - 86077207
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
AAATTGATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AACTATATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
68.7
0.42
1.1
63.6
46
Minor 5ss
34.3
-1.8
2.8
37.6
42.2
Minor BPS
49.6
-0
1.8
60.99
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023233
86075629 - 86077281
1653