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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86107792_86122843_R

Intron Information:

Intron Rank:
137587
Intron Class:
major
Intron Phase:
Intron Coordinates:
86107792 - 86122843
Intron Length:
15052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTGCTAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
79
0.72
1
69
38.9
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
39.4
-1.2
2.9
52.4
44.8
Minor BPS
47.5
-0.1
2
68.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021519
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022269
86107558 - 86135277
27720