Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86117535_86124300_F

Intron Information:

Intron Rank:

146473

Intron Class:

major

Intron Phase:

Intron Coordinates:

86117535 - 86124300

Intron Length:

6766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTGTT

5'SS Class:

major

3'SS Sequence:

CTTTCCATTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CTTTCCATTATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.2

77.3

37.8

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

79.3

0.66

0.8

73.7

29.8

Minor 5ss

33.6

-1.9

3.5

49.5

46.8

Minor BPS

56.9

0.21

1.9

72.16

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028927

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017412

86116908 - 86125087

8180