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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86132922_86135236_R

Intron Information:

Intron Rank:
137589
Intron Class:
major
Intron Phase:
Intron Coordinates:
86132922 - 86135236
Intron Length:
2315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACAAATT
5'SS Class:
major
3'SS Sequence:
TCATTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TACTAATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.1
70.8
39.1
Major BPS
100
1.24
0.5
100
0
Major PPT
76.6
0.6
0.8
72.7
32
Minor 5ss
37.8
-1.4
3.4
54.5
44.7
Minor BPS
55.5
0.26
1.9
74.58
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021519
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022269
86107558 - 86135277
27720