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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86230716_86230823_F

Intron Information:

Intron Rank:
129530
Intron Class:
major
Intron Phase:
Intron Coordinates:
86230716 - 86230823
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATATCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.7
0.65
0.9
78.2
35
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
66
0.58
1.5
78.98
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028548
86227728 - 86232020
4293