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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86280594_86284086_R

Intron Information:

Intron Rank:
139160
Intron Class:
major
Intron Phase:
Intron Coordinates:
86280594 - 86284086
Intron Length:
3493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022347
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018141
86279731 - 86284270
4540