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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86285237_86285867_F

Intron Information:

Intron Rank:
142596
Intron Class:
major
Intron Phase:
Intron Coordinates:
86285237 - 86285867
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TCTGTATTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATATATTAACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.5
33.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
73.2
0.52
1
69.4
40.7
Minor 5ss
34.8
-1.7
3.2
43.2
39
Minor BPS
46.9
-0.1
2
67.84
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026851
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036614
86281456 - 86286011
4556