Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8652283_8658706_R

Intron Information:

Intron Rank:

130454

Intron Class:

major

Intron Phase:

Intron Coordinates:

8652283 - 8658706

Intron Length:

6424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

GATTACTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GATTACTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

72.6

0.51

0.9

65.1

40.6

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

0.25

70.72

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034945

8652010 - 8658937

6928

ENSAPLT00000025420

8652123 - 8672689

20567