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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86570325_86582877_F

Intron Information:

Intron Rank:
145362
Intron Class:
major
Intron Phase:
Intron Coordinates:
86570325 - 86582877
Intron Length:
12553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TTTGTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.8
0.65
0.9
72.5
37.8
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
71.8
0.76
1.5
86.09
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036528
86570065 - 86588321
18257