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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86575005_86582877_F

Intron Information:

Intron Rank:
145364
Intron Class:
major
Intron Phase:
Intron Coordinates:
86575005 - 86582877
Intron Length:
7873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGATCTT
5'SS Class:
major
3'SS Sequence:
TTTGTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
67.2
43.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.8
0.65
0.9
72.5
37.8
Minor 5ss
34.5
-1.8
3.3
50.3
46
Minor BPS
71.8
0.76
1.5
86.09
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040032
86574870 - 86588321
13452