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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8658813_8664833_R

Intron Information:

Intron Rank:
130455
Intron Class:
major
Intron Phase:
Intron Coordinates:
8658813 - 8664833
Intron Length:
6021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
GTACATTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
65
0.34
1.2
64.2
41.8
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
48.9
-0
1.7
60.35
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017441
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025420
8652123 - 8672689
20567