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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8664889_8672624_R

Intron Information:

Intron Rank:
130456
Intron Class:
major
Intron Phase:
Intron Coordinates:
8664889 - 8672624
Intron Length:
7736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CAGTATTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
36.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
39.7
-1.2
3.1
57.2
46.8
Minor BPS
61.4
0.35
1.5
65.17
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017441
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025420
8652123 - 8672689
20567