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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86652165_86655339_F

Intron Information:

Intron Rank:
134900
Intron Class:
major
Intron Phase:
Intron Coordinates:
86652165 - 86655339
Intron Length:
3175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTACATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATATTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.7
0.76
0.8
77.7
35.4
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
51
0.11
1.7
70.54
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022566
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026387
86650675 - 86655648
4974