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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_866893_875885_R

Intron Information:

Intron Rank:
139236
Intron Class:
major
Intron Phase:
Intron Coordinates:
866893 - 875885
Intron Length:
8993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACACT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAA
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
70.4
39.6
Major BPS
60.5
0.26
1.3
63.4
44.3
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
41.5
-0.9
3
55.5
43
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022365
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046725
866843 - 876022
9180