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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86741868_86745400_R

Intron Information:

Intron Rank:
141266
Intron Class:
major
Intron Phase:
Intron Coordinates:
86741868 - 86745400
Intron Length:
3533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTTTTTGGTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
82.2
0.72
0.9
76.5
37.2
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
46.3
-0.2
2.4
75.74
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038870
86740684 - 86747825
7142