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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86887620_86887747_R

Intron Information:

Intron Rank:
132135
Intron Class:
major
Intron Phase:
Intron Coordinates:
86887620 - 86887747
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTTGTACT
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATGAT
U12 Branch Point Sequence:
CATCCCTAGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
71.2
38.1
Major BPS
60.7
0.27
1.2
51.5
43.9
Major PPT
89.3
0.88
0.7
84.5
30.4
Minor 5ss
43.2
-0.7
2.5
58.5
38.6
Minor BPS
48.6
-0.2
1.8
52.5
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025937
86886841 - 86887810
970