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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86943727_86944659_R

Intron Information:

Intron Rank:
136996
Intron Class:
major
Intron Phase:
Intron Coordinates:
86943727 - 86944659
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.2
35.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
29.7
-2.3
3.5
37.5
41.8
Minor BPS
75.5
0.88
1.4
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021198
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033575
86943490 - 86952588
9099