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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_86944710_86952495_R

Intron Information:

Intron Rank:
136997
Intron Class:
major
Intron Phase:
Intron Coordinates:
86944710 - 86952495
Intron Length:
7786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCAAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
63.9
0.31
1.1
56
42.8
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
49.3
0.03
2
77.27
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021198
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033575
86943490 - 86952588
9099