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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8709180_8709621_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8709180 - 8709621
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTAATTAATT
Flanking Amino Acid:
LLSCSHVFHKACLKAFEKFT
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
64
0.52
1.8
82.28
39

Associated Gene:

Gene:
RNF32
Ensembl Gene ID:
ENSAPLG00000007181
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007458
8701354 - 8716549
15196