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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8709747_8709961_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8709747 - 8709961
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTCTTGAACA
Flanking Amino Acid:
ARLYKIKCAIRIQASWRGYI
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
92.5
0.96
0.6
87.6
22.8
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
74
0.75
1.3
80.01
36.1

Associated Gene:

Gene:
RNF32
Ensembl Gene ID:
ENSAPLG00000007181
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007458
8701354 - 8716549
15196