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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8710071_8715749_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8710071 - 8715749
Intron Length:
5679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
CCAGGTCTAACA
Flanking Amino Acid:
KLRKQFFEEKVQQISSRLLS
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
90.8
0.92
0.6
88.8
20.5
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
42.1
-0.6
2.1
47.79
42.9

Associated Gene:

Gene:
RNF32
Ensembl Gene ID:
ENSAPLG00000007181
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007458
8701354 - 8716549
15196