About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87128659_87129955_F

Intron Information:

Intron Rank:
148357
Intron Class:
major
Intron Phase:
Intron Coordinates:
87128659 - 87129955
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTTTTCCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
86.4
28.9
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
43.5
-0.7
2.9
62.1
37.1
Minor BPS
49.5
-0.1
1.9
63.57
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029886
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029945
87125037 - 87130433
5397
ENSAPLT00000022695
87125037 - 87130433
5397