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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87141380_87143600_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87141380 - 87143600
Intron Length:
2221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAT
U12 Branch Point Sequence:
AGGATCCCAACA
Flanking Amino Acid:
MYIQQGLSTQAKFTEFPRNV
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
57.6
0.19
1
64.6
32.2
Major PPT
86.6
0.82
0.8
81.1
35.9
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
44.5
-0.4
1.8
52.37
39

Associated Gene:

Gene:
VSTM2A
Ensembl Gene ID:
ENSAPLG00000015377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043051
87141020 - 87178518
37499
ENSAPLT00000025233
87141020 - 87167088
26069
ENSAPLT00000016033
87141020 - 87153355
12336