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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87148256_87167008_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87148256 - 87167008
Intron Length:
18753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATCTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATGC
Flanking Amino Acid:
AKIPKQSPQSGVNHHVLGNE
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.9
0.42
0.9
67.3
38.7
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
58.1
0.23
1.9
73.08
38.7

Associated Gene:

Gene:
VSTM2A
Ensembl Gene ID:
ENSAPLG00000015377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025233
87141020 - 87167088
26069