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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8726728_8728391_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8726728 - 8728391
Intron Length:
1664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
TAATGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTCCTTACTG
Flanking Amino Acid:
AVREELMKAIGLDKLHLSNN
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
79.4
0.66
0.9
73.4
41.4
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
74.3
0.62
1.6
79.08
38

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201