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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8732575_8733989_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8732575 - 8733989
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTTTCTCATTT
Flanking Amino Acid:
PRKDDTTMTKIIGNCVSILV
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
70.8
0.47
1
66.7
38.2
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
56.4
0.28
1.8
76.55
40.4

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201