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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8735293_8735533_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8735293 - 8735533
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCGTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATACTTTTAAAT
Flanking Amino Acid:
AVMILLLTETSISVLLVAFN
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.9
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.2
0.79
0.8
79.7
32.4
Minor 5ss
39.9
-1.1
3.2
59.5
44.6
Minor BPS
61.7
0.44
1.3
73.8
36.4

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201