About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8735611_8736593_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8735611 - 8736593
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTGTTCTGAACA
Flanking Amino Acid:
EKVKSKKTNLERRKKASAWE
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74
30.6
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
69.1
0.43
1
65.5
39.9
Minor 5ss
38.3
-1.3
3
50.5
46.1
Minor BPS
66.1
0.5
1.5
71.55
40.8

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201