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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87386599_87404889_R

Intron Information:

Intron Rank:
138888
Intron Class:
major
Intron Phase:
Intron Coordinates:
87386599 - 87404889
Intron Length:
18291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TACACATTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
77.9
0.63
0.7
71.6
26.5
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
49.9
-0.1
1.8
56.31
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045269
87384208 - 87405737
21530