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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87390290_87398582_R

Intron Information:

Intron Rank:
138885
Intron Class:
major
Intron Phase:
Intron Coordinates:
87390290 - 87398582
Intron Length:
8293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.7
0.6
0.8
77
31.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
68.4
0.57
1.9
85.88
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040017
87390085 - 87405737
15653